Ryan Hernandez's SFS_CODE (Selection on Finite Sites under Complex Demographic Effects), described in Hernandez (2008) Bioinformatics is available here.
Supplementary materials for Coop et al. (2008) Science.
Carole Ober’s website on mapping in the Hutterites: http://www.genes.uchicago.edu/hutterite/home.html
Tar file including MIMAR program, goodness of fit test and readme files for Becquet and Przeworski (2007) Genome Research. See here for an introduction.
Supplementary materials for Teshima et al. (2006) Genome Research: PDF file.
For the program described in Przeworski et al. (2005) Evolution, SELSIMSTAND, contact Graham Coop.
For general coalescent simulations of positive selection, see SELSIM at http://www.stats.ox.ac.uk/~spencer/
Supplementary materials for Ptak et al. (2004) Genetics: PDF file.
Program described in Przeworski (2003) Genetics, available upon request to Molly Przeworski.
Supplementary materials for Ptak and Przeworski (2002) TIG: Tab-delimited text file.